Journal Guides7 min readUpdated Mar 25, 2026

Writing a Cover Letter for Science (AAAS): What the In-House Editors Actually Screen For

Science has 20+ PhD-level in-house editors who desk-reject 75% of submissions. Your cover letter isn't a formality. It's the document that determines whether anyone reads page two of your manuscript.

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Specializes in manuscript preparation and peer review strategy for oncology and cell biology, with deep experience evaluating submissions to Nature Medicine, JCO, Cancer Cell, and Cell-family journals.

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How to use this page well

These pages work best when they behave like tools, not essays. Use the quick structure first, then apply it to the exact journal and manuscript situation.

Question
What to do
Use this page for
Getting the structure, tone, and decision logic right before you send anything out.
Most important move
Make the reviewer-facing or editor-facing ask obvious early rather than burying it in prose.
Common mistake
Turning a practical page into a long explanation instead of a working template or checklist.
Next step
Use the page as a tool, then adjust it to the exact manuscript and journal situation.

Most researchers write their Science cover letter last. They finish the manuscript, exhale, then slap together a few paragraphs that read like a slightly reworded abstract. This is a mistake, and at Science specifically, it's a costly one. The journal runs on a model that's different from most of academic publishing, and if you don't understand that model, your cover letter won't do its job.

Here's the thing that matters: Science doesn't use academic editors. It employs 20+ in-house editors, all holding PhDs and carrying 7+ years of editorial experience. These aren't your peers reviewing manuscripts on weekends between grant deadlines. They're full-time professionals whose entire job is evaluating whether a paper belongs in the journal. They're fast, they're experienced, and they've read thousands of cover letters. Yours needs to be better than average.

The Numbers You Should Know Before Writing

Before you draft a single sentence, understand what you're up against.

Metric
Value
Annual submissions
~12,000
Overall acceptance rate
~7%
Desk rejection rate
~75%
Time to desk decision
1-2 weeks
Impact Factor
~45.8
Editorial model
In-house PhD editors (20+)
Submission portal
cts.sciencemag.org (online only)

That 75% desk rejection rate is the number that should shape your cover letter strategy. Three out of four papers never reach a reviewer. The editors make that call based on your abstract, your figures, and your cover letter. You can't rewrite your data, but you can control how you frame it.

What Science Requires in the Cover Letter

Science has a longer checklist of required cover letter elements than most journals. Miss any of these and you'll either get a request to resubmit with the missing information or, worse, you'll signal that you didn't read the submission guidelines.

1. Title and main point statement. State the title of your paper and, in one or two sentences, what the paper shows. Not what it "investigates" or "explores." What it demonstrates.

2. Related manuscripts elsewhere. If you have related manuscripts submitted, in review, or in press at other journals, disclose them. Science takes this seriously.

3. Pre-submission discussion references. If you contacted a Science editor before submitting, name them and reference the conversation. This is valuable real estate in your letter. Use it.

4. Names of colleagues who saw the paper. This is the requirement that surprises people. Science explicitly asks you to list colleagues who reviewed or saw a draft of your manuscript before submission. It's not optional. It's not a suggestion. List them.

5. Dual submission declaration. Confirm the paper isn't simultaneously submitted elsewhere.

6. Ethics statements. If your work involves human subjects or animal care, include the relevant ethics approval information.

7. Data availability statement. State where the data and materials underlying the paper can be accessed.

That's seven distinct elements. Most cover letters for other journals need three or four. If you're recycling a cover letter from a Nature or Cell submission, you're almost certainly missing something.

How to Structure the Letter

The best Science cover letters follow a pattern. Not because editors want formulaic writing, but because the pattern ensures you hit every requirement while still making a strong scientific case.

Opening paragraph: The finding and why it matters. Don't start with background. Don't start with "Dear Editors, we are pleased to submit..." Start with what you found and why it changes something. The editors know the background. They have PhDs in your field or an adjacent one.

Second paragraph: Broader significance. Science publishes for a readership that spans every discipline. Your finding about protein folding dynamics needs to matter to someone outside structural biology. Your climate model results need to connect to policy or ecology or economics. Make the cross-disciplinary case in two to three sentences. Be specific about which other fields benefit.

Third paragraph: Required disclosures. This is where you put the elements from the checklist above: related manuscripts, pre-submission discussions, colleague names, dual submission declaration, and ethics statements. Don't scatter these across the letter. Group them so the editor can verify compliance quickly.

Closing paragraph: Data availability and contact. State your data availability commitment and provide contact information for the corresponding author.

Cover Letter Template for Science

Dear Science Editors,

We submit the enclosed manuscript, "[Title]," for consideration

as a Research Article in Science. We demonstrate that [one-sentence

core finding, specific and direct]. This result resolves [specific

gap or open question] and has implications for [name 2-3 fields

or applications beyond your own].

[Two to three sentences on broader significance. Why should a

scientist in a different discipline care? What does this change

about how the problem is understood, treated, or modeled? Be

concrete.]

We wish to disclose the following: [Related manuscripts at other

journals, if any, or "We have no related manuscripts submitted

or in press elsewhere."] [Reference to pre-submission discussion:

"We discussed this work with Dr. [Editor Name] on [date], who

encouraged submission." Or omit if no prior contact.] The

following colleagues reviewed a draft of this manuscript prior

to submission: [Names and affiliations]. We confirm this

manuscript is not under consideration at any other journal.

[Ethics statement: "This study was approved by [IRB/IACUC] under

protocol [number]." Include if applicable.] [Animal care

statement if applicable.]

Data and materials are available at [repository, DOI, or

accession number]. The corresponding author can be reached at

[email].

Sincerely,

[Corresponding author name and affiliation]

Example: Strong vs. Weak Opening Paragraphs

Weak: "We are pleased to submit our manuscript entitled 'Novel Insights into the Role of X in Y' for your consideration. In this study, we investigated the relationship between X and Y using a combination of experimental and computational approaches. Our results provide new understanding of this important biological process."

Why it fails: No specific finding. No claim. "Novel insights" and "new understanding" are empty phrases. The editor still doesn't know what you discovered. And "we are pleased to submit" wastes the most valuable sentence in the entire letter.


Strong: "We submit 'Direct Evidence that X Drives Y Through Mechanism Z' for consideration in Science. We show that X activates pathway Z in human tissue, resolving a two-decade question about whether the X-Y association is causal or correlational. This finding reframes therapeutic strategies for [disease] and introduces a target validated across three independent patient cohorts."

Why it works: Specific finding in the first sentence. A claim, not a hedge. The gap is named and dated. Clinical and therapeutic relevance is stated, connecting the work to medicine and drug development beyond the basic science.

Common Mistakes Specific to Science

Treating it like a Nature cover letter. Science and Nature have different editorial structures. Nature uses academic editors for some journals in the portfolio. Science uses in-house editors for the flagship. The implication: Science editors aren't your disciplinary peers. They're generalists with deep training. Write accordingly. Don't assume domain-specific shorthand will land.

Forgetting the colleague list. This trips up first-time submitters constantly. Science wants to know who else has seen the paper. It's a transparency measure. Leaving it out doesn't just create a gap in your letter. It suggests you didn't read the guidelines, which is a bad signal to send to editors who desk-reject 75% of what comes in.

Burying the finding in background. The first paragraph of too many Science cover letters is a literature review. Editors don't need you to summarize the field. They need you to tell them what's new. Lead with the result.

Skipping the "why Science" argument. You're submitting to a journal with an impact factor 45.8. The editors know you want the prestige. What they need to hear is why this paper fits Science's editorial mission of publishing research with broad significance across the sciences. That's a different argument than "this is good work."

Omitting the data availability statement. Science has been increasing its emphasis on open data and reproducibility. A cover letter that doesn't mention data availability looks incomplete. State where the data lives, even if it's "available upon request" (though a repository link is stronger).

Using the wrong portal. Science only accepts submissions at cts.sciencemag.org. There's no email submission. There's no alternate system. If you're preparing a cover letter as a PDF attachment for email, you're already off track.

Pre-Submission Inquiries: Use Them

Science accepts pre-submission inquiries, and using one before writing your full cover letter is a smart move. Contact the editorial office with a brief summary of your findings (a few paragraphs, not a full abstract). If an editor responds positively, that response becomes one of the strongest elements you can include in your cover letter.

"We discussed this work with Dr. [Name] on [Date], who indicated the topic would be of interest to Science" is a sentence that changes how your submission is handled. It tells the receiving editor that someone on the team has already flagged this paper. It won't guarantee acceptance, but it can prevent an uninformed desk rejection.

Getting Your Cover Letter Reviewed Before Submission

Your cover letter is a persuasion document, not a summary. It's worth getting feedback on it separately from the manuscript itself. Ask a colleague outside your subfield to read just the cover letter and tell you: can you explain what the paper found and why it matters?

If they can't, rewrite. An AI-powered manuscript review can also catch structural problems, missing required elements, and framing issues that are hard to see in your own writing. The point isn't to outsource the letter. It's to make sure the letter does what you think it does before it lands on an editor's desk.

The Timeline After You Submit

Understanding what happens after your cover letter arrives helps you calibrate expectations.

Stage
Typical Timeline
Cover letter + abstract screened
Within days of submission
Desk rejection decision
1-2 weeks
Sent to peer review
2-4 weeks after submission
First reviewer reports
4-8 weeks after peer review starts
Final decision
Varies widely

If your paper survives the desk review stage, you've already beaten 75% of the field. The cover letter's job is to get you past that first gate. Everything after that depends on the science, the reviewers, and the editorial discussion.

Final Checklist Before Submitting

Run through this before you upload at cts.sciencemag.org:

  • Title stated clearly in the letter
  • Core finding in the first two sentences (specific, not hedged)
  • Broader significance explained for non-specialists
  • Related manuscripts disclosed
  • Pre-submission editor discussion referenced (if applicable)
  • Colleagues who saw the draft listed by name
  • Dual submission declaration included
  • Ethics approvals stated (human subjects and/or animal care)
  • Data availability statement present
  • Letter is one page or less
  • Submitted through the correct portal (cts.sciencemag.org)

Get these right and you've done everything in your power to give your paper a fair hearing. In a journal that rejects 93% of what it receives, that's not a small thing.

References

Sources

  1. Official submission workflow from the Science manuscript portal and AAAS's Science author-information surfaces, which outline required disclosures and submission materials.

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This article answers one part of the publishing decision. The reference library covers the recurring questions that usually come next: how selective journals are, how long review takes, and what the submission requirements look like across journals.

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