Major Revision at Nature: What It Means, Next Steps
If Nature sent your manuscript back as a major revision, here is what the decision means, how the original referees re-review, and how to write the response to referees that survives a second round.
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Last reviewed: 2026-10-08.
Quick answer: A major revision at Nature means your manuscript cleared the steepest desk screen in life-science publishing, where Nature says most submissions are declined without peer review, and the handling editor now sees a paper that could become publishable after substantial further work.
Nature says that when a final decision is deferred pending your response, the revised paper is sent back to some or all of the referees and should be accompanied by a point-by-point response to all the referees' comments (per Nature editorial criteria and processes). The two-month deadline, retained submission date and two-resubmission maximum sometimes quoted for Nature come from the Nature Communications editorial process page, and Nature's own pages do not state them.
Nature publishes no journal-specific acceptance-after-revision number; treat the decision as a strong signal, not a guarantee. The decisive document now is your point-by-point response to referees.
For a second opinion on your revised manuscript before the referees see it again, run a Nature revision readiness check.
Related Manusights pages: Nature journal profile, Nature Under Review status guide, Nature submission guide, and Nature response to reviewers.
What does a major revision at Nature actually mean?
At Nature a major revision is one of the rarest and most valuable outcomes a manuscript can receive. Nature uses a full-time professional editor model: handling editors who left research for editorial work read the entire paper and judge broad significance, scientific rigor, and Nature-family routing. With most submissions declined without peer review, and authors usually informed within a week when a paper is not being considered, the majority of papers never reach a referee at all.
For a manuscript to receive a major-revision decision, it had to survive the desk screen, the internal editor discussion, external refereeing, and convince the handling editor that the remaining concerns are addressable rather than fatal.
A Nature major-revision letter typically confirms editorial interest, lists the referee concerns the editor considers decision-relevant, and may give timing guidance. The editor's framing is the signal that matters: if the letter invites a revision addressing specified points, that is a commitment to reconsider the same manuscript, not a soft rejection.
How is major revision different from minor revision or reject-and-resubmit at Nature?
Decision at Nature | What it signals | What happens to your manuscript |
|---|---|---|
Accepted in principle (minor revision) | Some revisions are needed in response to the referees' comments, with no further technical work required | Revised papers are not usually sent back to the referees; the editors check that the suggestions are implemented and the paper is in the required format |
Final decision deferred (major revision) | Further experiments or technical work are usually required to address some or all of the referees' concerns | Revised paper goes back to some or all of the referees; needs a point-by-point response to all comments |
Reject with option to resubmit | Referees raised considerable technical objections and/or the claim was not adequately established; the letter states a resubmitted version would be considered | All referees' technical comments must be satisfactorily addressed, with a point-by-point response; editors will not send the resubmission to the referees if no serious attempt is made |
Reject after review | Rejected with no offer to reconsider a resubmitted version | Authors are strongly advised not to resubmit a revised version, which will be declined without further review; transfer or submit elsewhere |
The decisive line is whether the editor's letter invites a revision of the same paper. A deferred decision sends the revised paper back to some or all of the original referees, which is why it is materially stronger than a rejection with an invitation to resubmit.
What are my odds after a major revision at Nature?
Nature does not report an acceptance-after-major-revision rate, so any precise Nature-specific number you encounter is fabricated. The defensible framing rests on two verifiable facts: Nature's overall acceptance rate is roughly 8 percent, and a manuscript at major revision has already passed the desk screen, the internal discussion, and a round of external refereeing.
- Reaching a major revision means you cleared the filter that declines most submissions before review.
- Editorial commitment is real but conditional: handling editors retain discretion to reject after re-review.
Spend your energy resolving every editor-flagged concern in the first resubmission rather than estimating a percentage Nature does not publish.
What is the revision deadline and timeline at Nature?
Nature's published pages do not state a revision deadline or a rule on submission dates; the typical two-month deadline and retained submission date appear on the Nature Communications editorial process page, not on Nature's. Read your decision letter for any deadline, and if you cannot meet it, contact the handling editor before it passes.
Stage after a major revision | Planning suggestion (not published by Nature) | What you should do |
|---|---|---|
Reading the decision letter and referee reports | Days 1 to 3 | Separate editor-mandated points from optional referee suggestions |
Planning new experiments | Week 1 | Scope against any deadline in your letter; request an extension early if needed |
Executing revisions and drafting the response | Weeks 2 to 7 | Build the point-by-point response in parallel; aim to close every concern in one round |
Internal review of the rebuttal | Final week | Pressure-test completeness; the referees need to see a serious attempt at every criticism |
Re-review by original referees | 4 to 12 weeks after resubmission | Prepare for a possible further round |
If the experiments will not fit the deadline in your letter, contact the editorial office through the Nature Manuscript Tracking System at mts-nature.nature.com with your manuscript ID before the deadline. Nature publishes no extension policy; the avoidable failure is going silent and resurfacing after the window has closed.
Hold the revised Article within the length the editor specifies while you add the requested work: Nature's formatting guide describes typical Articles of about 2,500 words (6 print pages) or about 4,300 words (8 print pages) with a summary paragraph ideally no more than 200 words, and says essential but technical details can be moved into the Methods or Supplementary Information. If a major revision pushes the paper past the length the editor gives you, plan the trim before you resubmit.
Confirm open-access economics too, because Nature charges an article processing charge of $12,850 (or £9,390, or €10,850) for the immediate gold open-access route on acceptance, so a funder conversation belongs in the revision window rather than after a positive decision.
How do Nature referees evaluate a revised manuscript?
When a final decision is deferred pending your response, Nature sends the revised manuscript back to some or all of the original referees. Write the response so the referees can quickly see that you engaged seriously with their reports. Nature's referee questions cover originality and significance, validity, data and methodology, statistics, and conclusions; on re-review they check whether the specific concerns they raised are now resolved in the manuscript itself.
Referee focus on re-review | What they are checking | How to satisfy it |
|---|---|---|
Did the authors address my actual concern? | Whether your action matches the substance of the comment, not a softer version | Quote the comment, then show the exact change |
Is the broad-significance case stronger? | Whether the revised abstract and first figure carry the cross-field claim | Rewrite the framing if the original concern was scope, not data |
Are the new experiments rigorous? | Whether added data, controls, and statistics meet the Nature bar | Report new work with full Reporting Summary discipline |
Is reproducibility now documented? | Whether source data, code, and Methods let another lab reproduce the claim | Deposit data and code; give exact manuscript locations |
Is the response honest where you disagreed? | Whether pushback is reasoned and literature-backed | Concede valid points; defend others with citations and courtesy |
How do you write the response to referees at Nature?
Nature asks that a revised paper be accompanied by a point-by-point response to all the comments made by all the referees; a short cover letter explaining how the manuscript changed is a sensible addition. Write the response so it is the first thing the referees can read.
- Letter for the overview, document for the detail. Use the cover letter to summarize how the manuscript changed at the level of broad significance; carry the referee-by-referee engagement into the separate point-by-point document, since Nature asks for a point-by-point response.
- Echo, address, pinpoint. Repeat each referee's comment, state the experiment or rewrite you did in response, and pinpoint the exact page, figure, or Reporting Summary item that now reflects it.
- Re-anchor broad significance where that was the concern. If a referee questioned scope rather than data, the revision must move the cross-field claim into the title, abstract, and first figure, not just add experiments.
- Disagree honestly and within the editor's roadmap. A major revision means the editor saw a path to acceptance, so you can push back on a referee request the editor did not specifically endorse, with literature support and courtesy, never dismissively, and never on a point the editor flagged.
- Make the first resubmission count. Nature says editors will not send a resubmitted paper back to the referees if it seems the authors have not made a serious attempt to address all the criticisms, so treat round one as the round that must close every editor-flagged concern.
Route your revised manuscript through a Nature point-by-point response check so the broad-significance framing and Reporting Summary completeness are verified against the referees' concerns before you resubmit.
What should you NOT do in a Nature resubmission?
- Do not treat a later round as a safety net. Nature publishes no resubmission limit, but editors will not send a paper back to the referees without a serious attempt at every criticism, so the first must resolve every editor-flagged concern.
- Do not leave the broad-significance claim in the cover letter while only adding data. Referees re-check the framing.
- Do not skimp on the Reporting Summary, source data, or code. Reproducibility is a named referee focus on re-review.
- Do not write a combative rebuttal to a significance or reproducibility concern. A referee re-reading a defensive response hunts harder for reasons to reject.
- Do not promise changes the manuscript does not contain. Referees verify the file.
- Do not miss any deadline in your decision letter without contact.
Common reasons manuscripts get major revision at Nature
Across Nature manuscripts, three patterns most often turn a possible acceptance into a major revision, and the same three most often decide whether the revision then survives a referee re-review. These are anonymized observations from Manusights pre-submission and revision review, not access to Springer Nature editorial records. Each is a named failure pattern tied to a specific Nature editorial expectation, and in practice we see them recur across the manuscripts we screen.
The useful question for a revising author is whether the revised abstract, first figure, Methods, Reporting Summary, and response to referees already answer the concern in the manuscript itself.
Broad-significance framing that the data support but the writing strands in the cover letter. In Nature manuscripts, the most common reason for a major revision is not a flawed experiment but a broad-significance claim that lives in the cover letter or discussion rather than the title, abstract, and first figure. Referees grant a major revision to force the framing to match the evidence.
The strongest revisions rewrite the abstract and Figure 1 so a reader outside the immediate subfield can name the advance in one sentence, then carry that claim through the introduction and discussion. A revision that adds data without re-anchoring the framing wastes a round, since the same referee concern returns.
Reporting Summary and reproducibility gaps that re-review tests directly. In Nature manuscripts, referees frequently grant a major revision while flagging incomplete reporting: missing ARRIVE, CONSORT, or STROBE items, absent randomization or blinding statements, thin statistical reporting, or data-availability and code-availability documentation that would not let another lab reproduce the central result.
The decision reads as a major revision because the science is promising, but the path to acceptance runs through the Methods, figure legends, source data, and Reporting Summary. The strongest revisions close every flagged item with an exact manuscript location in the response to referees, so the re-reviewing referee can verify the fix without reconstructing it from the supplement.
Nature-family transfer logic that authors mistake for failure. In Nature manuscripts, a rigorous paper sometimes receives a major revision paired with a hint that the work might fit a specialty Nature title (Nature Communications, Nature Medicine, Nature Methods, Nature Genetics, Nature Neuroscience) if the broad-significance bar is not met. Authors lose a resubmission round when they treat that signal as rejection or ignore it.
The strongest revisions either make the broad-significance case undeniable in the first resubmission or prepare a Nature-family transfer plan that identifies which figure, dataset, or claim would make a specialty title cleaner, so a reject-with-transfer outcome costs days rather than weeks.
This page tells you what Nature handling editors and referees look for when they re-read a revised manuscript. The review tells you whether YOUR revised paper and response to referees pass that check before you resubmit. Use this page when you have just received a major revision at Nature and need to decide what to fix first, given the cost of each revision round.
We have reviewed manuscripts targeting Nature and peer Nature Portfolio venues in pre-submission and revision contexts; the named patterns above are the same ones referees flag on re-review. 60-day money-back guarantee. Your manuscript is not used for model training, and access is limited to the review workflow.
Of the manuscripts our team reviewed for this Nature decision-outcome pattern sample, the strongest predictor of a clean referee re-review was whether the first resubmission closed every editor-flagged concern with an exact, already-present manuscript location, rather than spreading the fixes across several rounds.
Where does Nature cascade if the revision is rejected?
If a Nature revision is rejected after re-review, the cascade depends on what the referees and editor cited.
Nature Communications is the most natural Springer Nature cascade because Nature Portfolio supports manuscript transfer with referee reports preserved, and the documented revision history travels with the paper.
Specialty Nature titles (Nature Medicine, Nature Methods, Nature Genetics, Nature Neuroscience, and similar) are natural cascades where the work fits a specialty editorial scope, and Communications journals are the Nature Portfolio open-access cascade.
Science and Cell are external top-tier general-science and life-sciences cascades; reports do not transfer, but a documented Nature revision strengthens a fresh submission.
How does a major revision at Nature compare to its peers?
Feature | Nature | Nature Communications | Cell | |
|---|---|---|---|---|
Overall acceptance rate | ~8 percent | ~20 percent | 6 to 7 percent | ~10 to 15 percent |
Revision returns to original referees | Usually | Usually | Usually | Usually |
Resubmission limit | No limit stated on Nature's pages | Up to two (Nature Communications editorial process page) | Editor discretion | Editor discretion |
Revision retains original submission date | Nature's pages do not say | Yes, if returned within the deadline | Yes | Yes |
Peer-review model | Referee identities not released to authors; double-anonymized option; peer review file published with original research articles submitted on or after 16 June 2025 | Transparent (mandatory if accepted) | Confidential single-blind plus Board of Reviewing Editors | Cell Press transparent (optional) |
Distinctive re-review feature | Point-by-point response to all referees and Nature-family transfer logic | Transparent published reports | Board of Reviewing Editors broad-significance re-check | 10-day referee target |
Nature revision checklist
- Separate editor-mandated concerns from optional referee suggestions before planning any new experiments.
- Plan the first resubmission to close every editor-flagged concern, since editors will not send a paper back to the referees without a serious attempt at every criticism.
- Re-anchor the broad-significance claim in the title, abstract, and first figure if scope was the concern.
- Close every Reporting Summary, statistics, and data-availability gap, and locate each fix in the response to referees.
- Prepare a point-by-point response to all referee comments, as Nature requests, plus a short cover letter.
- Map a Nature-family transfer plan in case the broad-significance bar is judged unmet.
- Confirm any deadline in your decision letter and request an extension early if the experiments need it.
Submit if your first resubmission closes every editor-flagged concern
If your Nature major revision resolves the specific points the editor's letter highlighted, with the broad-significance framing re-anchored and every reporting gap closed and located, you are in a strong position for re-review. The Nature revision readiness check takes about 5 minutes and flags the framing, reproducibility, and response-to-referees weaknesses most likely to surface on re-review.
Readiness check
Run the scan while the topic is in front of you.
See score, top issues, and journal-fit signals before you submit.
Think twice if
Nature handling editors retain discretion to reject after re-review, and editors will not send a paper back to the referees without a serious attempt at every criticism, so a partial first revision leaves little margin. The 8 percent overall acceptance rate means a strong revision is necessary but not sufficient.
- The revision adds experiments but leaves the broad-significance claim in the cover letter rather than the abstract and first figure.
- The Reporting Summary, source data, or code gap a referee flagged is still open in the revised file.
- The response to referees argues instead of showing each change, or the work would clearly be cleaner at a specialty Nature title.
For a pre-resubmission diagnostic of broad-significance framing, Reporting Summary completeness, and response quality, run a Nature revision diagnostic before referees re-read the manuscript.
Last verified: Nature Portfolio editorial process documentation at Nature Portfolio journal page and Springer Nature author guidance.
Methodology note
This page was created from Springer Nature public editorial-process documentation at Nature Portfolio journal page, the broader peer-review literature on major-revision handling and response-letter structure, and Manusights pre-submission and revision review experience with Nature-targeted manuscripts.
Source limitations: Nature's own pages describe the return of revised papers to some or all of the referees and the need for a point-by-point response. The two-month revision deadline, the submission-date-retention rule and the two-resubmission limit are published on the Nature Communications editorial process page, not Nature's, and no journal-specific acceptance-after-major-revision rate is published.
Any precise Nature-specific revision-acceptance percentage is therefore not verifiable. The named revision patterns are Manusights interpretation from pre-submission and revision review, not private Springer Nature records.
Frequently asked questions
Nature does not use the term major revision in its published guidance. Its closest decision is that a final decision on publication is deferred pending the authors' response to the referees' comments: further experiments or technical work are usually required, and revised papers are sent back to some or all of the referees for a second opinion. Nature says the revised paper should be accompanied by a point-by-point response to all the comments made by all the referees.
Nature does not publish a figure for acceptance after a deferred decision or revision. It says only about 8% of submitted manuscripts are accepted overall, and that all Articles published in Nature go through at least one round of review, usually two or three. Treat a revision invitation as a strong directional signal rather than a number.
Nature's published pages do not state a revision deadline. The two-month typical deadline sometimes quoted for Nature appears on the Nature Communications editorial process page, not on Nature's own pages. Read your decision letter for any deadline, and if you need more time, contact the handling editor through the Nature Manuscript Tracking System with your manuscript ID before it passes.
Usually, when the decision defers a final decision pending your response: Nature says revised papers are then sent back to some or all of the referees for a second opinion. Nature also says that when reviewers agree to assess a paper it considers this a commitment to review subsequent revisions, and that it occasionally brings in additional reviewers to resolve disputes. For a paper accepted in principle, Nature says revised papers are not usually sent back to the referees. Nature advises using language that would not cause offence when the paper is shown again to the referees.
Nature asks that a revised paper be accompanied by a point-by-point response to all the comments made by all the referees; a short cover letter summarizing what changed is a sensible addition. Quote each comment, state your action, and point to the exact manuscript location. Use the handling editor's letter as the roadmap: address every point the editor highlighted, strengthen the broad-significance framing where that was the concern, concede valid points clearly, and explain disagreements with evidence and courtesy.
Nature's published pages do not state a maximum number of resubmissions; the wording 'a maximum of two resubmissions' is on the Nature Communications editorial process page. Nature says the editor's letter states whether a resubmitted version would be considered, and that editors will not send a resubmitted paper back to the referees if it seems the authors have not made a serious attempt to address all the referees' criticisms. Plan each revision to resolve every referee and editor concern.
When a final decision is deferred pending your response, the same paper is revised and sent back to some or all of the referees. When a paper is rejected with an invitation to resubmit, the editor's letter states that a resubmitted version would be considered, and you must satisfactorily address all the referees' technical comments, not just some, with a point-by-point response. Nature does not publish whether submission dates are retained in either case.
Sources
- Nature Communications editorial process (source of the two-month deadline and two-resubmission rules, which Nature's own pages do not state)
- Nature editorial criteria and processes
- Nature Manuscript Tracking System
- Springer Nature guidance on revising and responding to reviewers
- SciRev community-reported data on Nature
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