Journal Guides7 min read

Nature Communications Review Timeline: Desk Decision to Final Decision

Research Scientist, Neuroscience & Cell Biology

Works across neuroscience and cell biology, with direct expertise in preparing manuscripts for PNAS, Nature Neuroscience, Neuron, eLife, and Nature Communications.

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The Nature Communications review timeline is faster than most researchers expect from a Nature-family journal. Desk decisions in 1-9 days, first decisions in about a month. Here's exactly what happens at each stage.

The full Nature Communications review timeline at a glance

  • Desk review: 1-9 working days (most papers hear within a week)
  • Reviewer assignment: 5-10 days after passing desk review
  • Peer review: 14-25 days once reviewers confirm
  • First decision: 21-35 days from submission (median around 30 days)
  • Revision period: 6-8 weeks given to authors
  • Post-revision decision: 2-4 weeks
  • Acceptance to publication: 10-21 days (production is fast)

Total from submission to publication for a smooth acceptance: around 4-6 months.

Desk review: what happens in the first 9 days

After you submit, your paper goes to an in-house editor, not an external academic. They assess a few specific things:

Scope: Nature Communications publishes work from all natural sciences. The core question is whether the finding has significance beyond a single subdiscipline. A pure crystallography paper that only crystallographers care about probably won't pass. A structural biology paper with clear drug design implications might.

Novelty: The editor isn't doing a literature review, but they're checking whether the claims are clearly new. If your advance section reads like a replication study or incremental extension, that's a flag.

Data quality: Major methodological concerns visible at the abstract or figure level can trigger a desk rejection without reviewers ever seeing the paper.

Completeness: Missing required elements, including detailed methods, data availability statement, and ethics approval for clinical work, can cause a desk rejection or a delay before desk review even starts.

About 50-60% of submissions are desk rejected. If you receive a rejection without external reviewer comments, that's what happened.

Timing note: Papers submitted Monday through Wednesday tend to get desk decisions faster. Papers submitted late Friday often sit over the weekend before an editor picks them up.

After desk review passes

If your paper passes desk review, it goes to an associate editor. This is an academic researcher with relevant expertise, not a full-time Nature Communications staff member. Their job is to identify appropriate reviewers and make the final editorial recommendation.

This stage has the most variance in the timeline. The AE might start recruiting reviewers the same day, or it might sit in queue for a few days while the AE manages their own research commitments. Reviewer recruitment can take 1-3 weeks because many researchers decline invitations, are on deadlines, or simply don't respond within the window.

Nature Communications targets 2-3 reviewers per paper. Sometimes they get 2 and proceed; sometimes they wait for a third. The decision to proceed with 2 reviewers vs. hold for a third affects your timeline by up to a week.

Peer review: what reviewers actually look at

Nature Communications reviewers are external academics recruited specifically for their expertise. They evaluate four things:

Significance: Is this finding important enough to publish in a broad-scope, high-impact journal? Reviewers hold work to a higher standard than specialized journals because the intended audience is broader. A finding that would be perfectly adequate for a specialty journal sometimes doesn't clear this bar.

Rigor: Statistical analysis, appropriate controls, and reproducibility. Nature Communications has strengthened reporting requirements considerably over the past few years. Missing controls or underpowered statistics are among the most common rejection reasons at the peer review stage.

Clarity: Complex studies need clear exposition. If the logic of the paper is hard to follow, reviewers often recommend rejection rather than asking for a major revision. A paper that requires too much effort to understand tends to get rejected rather than improved at this journal.

Reproducibility: Data availability, detailed methods, and code sharing are increasingly expected rather than optional. Papers without these are at a disadvantage compared to five years ago.

Reviewers have 10-14 days to submit reports, but extensions are common. This variability explains why first decisions range from 21 days when everything goes smoothly to 45 days or more when a reviewer needs extra time or a replacement is required.

First decision categories

Accept without revision: Rare. Maybe 5% of papers that reach peer review. Usually reserved for exceptionally clean papers with only minor formatting issues.

Minor revision: Common. Reviewers want additional analysis, clarified writing, or extra supplemental data. Usually 2-4 weeks of author work. Nature Communications typically gives 4-6 weeks.

Major revision: The most common positive outcome for papers that survive desk review. Usually means new experiments or substantial reanalysis. Given 6-8 weeks. Returns for a second round of review.

Reject with invitation to resubmit: The paper has merit but needs fundamental changes before it's suitable. Treated essentially as a new submission when returned.

Reject: Paper doesn't meet the Nature Communications bar on novelty, rigor, or significance. This is the most common outcome even for papers that pass desk review.

What actually slows things down

The two biggest delay sources in the Nature Communications review process:

Reviewer recruitment. When the first 2-3 researchers approached decline, the AE starts over. Each invitation-response cycle takes around a week. Papers that need 4-5 rounds of recruitment before reviewers are confirmed can add 3-4 weeks before peer review even starts.

Major revision with new experiments. If reviewers ask for new data, you're looking at 8-16 weeks of author work before the paper comes back. That's where 12-18-month total publication timelines come from. It's not that Nature Communications is slow; it's that major revisions require substantial experimental work.

How to keep things moving

List 5+ suggested reviewers. Editors use these lists when recruitment is slow. Make sure they're genuine experts with no competing interests and real publication records in your subfield.

Respond to revisions quickly. Editors track turnaround time, and a fast revision response often correlates with a faster second decision. Some editors even note rapid turnaround in their editorial decision letters.

Flag deadline conflicts in your cover letter. If you have a conference deadline or a competing submission elsewhere, mentioning it in the cover letter isn't unusual. Editors sometimes expedite for time-sensitive situations.

Wait 6 weeks before following up. It's appropriate to query the editorial office after 6 weeks without a first decision. Before that, you're just adding inbox noise. After 8 weeks with no response to a query, escalate.

Tracking your submission status

Nature Communications uses the Nature submission system. The status tracker shows stages including "Manuscript received," "Editor assigned," "Under review," and "Decision pending." Watching these stages is useful, but the absence of a status change doesn't mean nothing is happening. Reviewer recruitment often happens without a visible status change. If you see 'Editor assigned' for 3+ weeks, reviewers are likely being recruited. If you see 'Under review' for more than 3 weeks, reviewers are working through the paper. Neither stage shows a firm deadline to authors, so patience is required. It's appropriate to query the editorial office after 6 weeks total without any decision.

Is Nature Communications worth the timeline?

For work that fits the scope, yes. IF 15.9 in 2024, read across disciplines, indexed in every major database. For a ~30-day first decision timeline, that's genuinely competitive with lower-tier journals that sometimes take just as long.

The real question is whether your work would pass desk review. About half of all submissions don't. If you want an honest read on whether your manuscript is ready before you submit, a pre-submission review can flag the exact gaps reviewers and editors would catch.

What happens after acceptance

Once accepted, Nature Communications moves quickly. The production team processes the paper within 5-7 working days. You get proofs to review within about 2 weeks of acceptance. After proof sign-off, papers typically appear online within 2-5 working days.

The post-acceptance window is usually 10-21 days. Combined with a 30-day first decision timeline for minor revision papers, a manuscript submitted today could be published online in roughly 3-4 months.

Comparing timelines across similar journals

vs. Nature Medicine: Slower. Nature Medicine desk decisions take 2-3 weeks and peer review averages longer.

vs. Science Advances: Science Advances takes 3-6 weeks at desk review because it uses academic handling editors. Total first-decision timelines end up similar, but the desk stage is noticeably faster at Nature Communications.

vs. PNAS: Comparable speed, with first decisions often in 30-45 days. PNAS allows author-suggested editors, which can speed up reviewer recruitment considerably.

If your paper is rejected

Rejection letters from Nature Communications include reviewer comments if the paper went through peer review, or a brief editorial note if desk rejected. The reviewer comments are often substantive enough to be useful even when submitting elsewhere.

Common paths after a rejection: PNAS or Science Advances for broad-scope work, or a top specialty journal in your field. Papers that pass desk review but get rejected after peer review usually have specific concerns worth addressing before the next submission.

The Bottom Line

The timeline is predictable. What's less predictable is whether your specific paper clears the desk on the first attempt or gets bounced back to you in 9 days. That outcome is mostly determined by what you do before submission, not by what happens during the process.

Sources

  • Journal official submission guidelines
  • Author experience data compiled from journal tracker communities (SciRev, Researcher.Life)
  • Editorial policies published on journal homepage
  • Pre-Submission Checklist , 25-point audit before you submit

See also


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